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Timesynth: A Temporal Fidelity Framework for Health Signal Digital Twins

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Computer Science > Machine Learning

arXiv:2607.00431 (cs)
[Submitted on 1 Jul 2026]

Title:Timesynth: A Temporal Fidelity Framework for Health Signal Digital Twins

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Abstract:Forecasting models for health-signal digital twins must preserve the oscillatory, frequency, phase, and state-transition dynamics of physiological signals, yet the pointwise metrics used to benchmark them cannot detect when these fundamental properties are lost. We show that this blind spot misranks models: across 11 architectures, models with comparable pointwise error diverge by up to 53° in phase accuracy, equivalent to roughly 123 ms for a 1.2 Hz cardiac rhythm and invisible to standard metrics. To enable development of models that escape such failures, we introduce TimeSynth, a controlled benchmarking framework with two reusable components: a physiologically grounded generator producing signals with analytically known ground-truth dynamics from parametric models fitted to real electroencephalography, electrocardiography and photoplethysmogram signals, along with diagnostics quantifying amplitude, frequency, phase, and state-transition fidelity. Linear and full-sequence attention models systematically lose frequency and phase information despite acceptable amplitude error, whereas architectures with localized temporal structure better preserve dynamical fidelity and adapt to observable state transitions; none, however, reliably preserves stochastic switching. Because the dominant determinant of fidelity is architectural, model choice becomes a principled, use-case-driven decision rather than a search for a single winner. TimeSynth thus supplies the controlled preclinical stress test missing before models are coupled to patient data, with a reusable generator and diagnostics for fidelity-aware development.
Comments: Under review at Nature Communications
Subjects: Machine Learning (cs.LG)
Cite as: arXiv:2607.00431 [cs.LG]
  (or arXiv:2607.00431v1 [cs.LG] for this version)
  https://doi.org/10.48550/arXiv.2607.00431
arXiv-issued DOI via DataCite (pending registration)

Submission history

From: Md Rakibul Haque [view email]
[v1] Wed, 1 Jul 2026 04:42:58 UTC (5,531 KB)
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